Research
Mission
Advance our current understanding of the biosynthesis of plant phenolic compounds
Apply this knowledge to design sustainable solutions for biomass utilization and crop improvement
Lignin Biosynthesis and Cell Wall Metabolic Engineering
Lignin is vital for plant structural integrity, water transport, and defense against pathogens. However, its resistance to degradation presents a major challenge to the efficient production of biochemicals, bioproducts, and biomaterials. Our research focuses on untangling the biochemical pathways and genetic regulation of lignin biosynthesis in various plant species, including grasses and woody plants. Using CRISPR/Cas9 genome editing, we generate targeted knockouts to study these pathways. By studying the roles of key enzymes in lignin metabolism, we aim to understand how lignin and other plant phenolic compounds are synthesized and how they can be modified to improve the efficiency of biomass conversion into renewable chemicals.
Figure 1. Pathways and subcellular compartmentation of lignin metabolism in plant cells.
Related papers:
"Modeling lignin biosynthesis: A pathway to renewable chemicals", Trends in Plant Science, Volume 29, Issue 5, p546-559 (2024). PDF
"4-Coumarate 3-hydroxylase in the lignin biosynthesis pathway is a cytosolic ascorbate peroxidase", Nature Communications, Volume 10, Article number 1994 (2019). PDF
"Lignin biosynthesis - old roads revisited and new roads explored", Open Biology, Volume 9, Issue 12, Pages 48-54 (2019). PDF
"Role of bifunctional ammonia-lyase in grass cell wall biosynthesis" Nature Plants, Volume 2, Article number 16050 (2016). PDF
Single-Cell Omic Approaches to Study Plant Metabolism
Our research integrates proteomics, metabolomics, and genomics to study plant metabolism. By leveraging multi-omic data and metabolic flux analyses, we aim to uncover the regulatory mechanisms that coordinate these processes and identify novel targets for engineering plants with enhanced biomass yield and stress tolerance. We are currently collaborating with EMSL scientists to use advanced single-cell proteomic and metabolomic tools, combined with stable isotope labeling experiments and mass spectrometry imaging, to investigate and trace these metabolic pathways with precise spatial resolution.
Figure 2. Cellular phenotyping in Arabidopsis (A) and Brachypodium (B,C) using laser microdissection and electron microscopy. Vb, vascular bundle; p, parechyma cell.
Related papers:
"Proteomic and metabolic disturbances in lignin-modified Brachypodium distachyon", The Plant Cell, Volume 70, Issue 10, Pages 3136-3141 (2022). PDF
"Multi-omic characterization of bifunctional peroxidase 4-coumarate 3-hydroxylase knockdown in Brachypodium distachyon provides insights into lignin modification-associated pleiotropic effects", Frontiers in Plant Science, Volume 13, Article number 908649 (2022). PDF
"Mathematical models of lignin biosynthesis", Biotechnology for Biofuels, Volume 11, Article number 34 (2018). PDF
"The cell biology of lignification in higher plants" Annals of Botany, Volume 115, Issue 7, Pages 1053-1074 (2015). PDF
CO2 Sequestration and Biomass Utilization
CO2 sequestration in plant biomass offers a promising approach to mitigating climate change by capturing and storing atmospheric carbon. Through photosynthesis, plants naturally sequester CO2, incorporating carbon into their cell walls. Our research focuses on optimizing plant biomass utilization to produce valuable bioproducts and enhance atmospheric carbon sequestration. We study the physiological and genetic mechanisms that improve carbon capture across different plant parts, such as the the roots of major crops like corn and soybeans, and stems of fast-growing trees like poplars. By exploring how biomass can be genetically engineered and efficiently processed, we aim to create sustainable methods for converting plant lignocellulosic biomass into renewable chemicals and materials, and enhance its CO2 storage potential, thereby reducing our overall carbon footprint.
Figure 3. Soybean (Glycine max) root system architecture and cell wall contribution to carbon sequestration.
3D video reconstruction of maize roots via laser ablation tomography.
Related papers:
"Development and commercialization of reduced lignin alfalfa", Current Opinion in Biotechnology, Volume 56, Pages 48-54 (2019). PDF
"Combining loss of function of FOLYLPOLYGLUTAMATE SYNTHETASE1 and CAFFEOYL-COA 3-O-METHYLTRANSFERASE1 for lignin reduction and improved saccharification efficiency in Arabidopsis thaliana" Biotechnology for Biofuels, Volume 12, Article number 108 (2019). PDF
"Second-generation bioethanol of hydrothermally pretreated stover biomass from maize genotypes", Biomass and Bioenergy, Volume 90, Pages 42-49 (2016). PDF
"Combining enhanced biomass density with reduced lignin level for improved forage quality" Plant Biotechnology Journal, Volume 14, Issue 3, Pages 895-904 (2015). PDF
"Biomass, sugar, and bioethanol potential of sweet corn", GCB Bioenergy, Volume 7, Issue 1, Pages 153-160 (2015). PDF